PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11923
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 250aa    MW: 27713.6 Da    PI: 7.4549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11923genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-1463109354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+e+ErrRR+riNs +++Lr+++P a      Kl+Ka+ L +++ ++k+L
  Tp57577_TGAC_v2_mRNA11923  63 KNHSEAERRRRARINSHLDTLRSVIPGA-----NKLDKASLLAEVITHLKEL 109
                                58*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.24760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1461118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1464125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-573111No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-5146190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMDDFSSTR INDSCFQGVM GNGYGLSSSS SLVLDRERGE LVEAAVKMER KGVSPERSIE  60
ALKNHSEAER RRRARINSHL DTLRSVIPGA NKLDKASLLA EVITHLKELK TNAAQASEGL  120
MIPKDNDEIR VESQEGGLNG FPYSIVASLC CDYKPGLLSD IRQALDALQL MIIRAEIATL  180
EGRMKNVFVI ISCKEQKFED AEYRQFLAGS VHQALRSVLD RFSVSQGVLE TRKRRRISIF  240
SSSSLGDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
2232236KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465233.11e-148transcription factor bHLH30
TrEMBLA0A2K3MNB00.0A0A2K3MNB0_TRIPR; Transcription factor bHLH30-like protein
STRINGXP_004487166.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-31bHLH family protein