PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11991
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 868aa    MW: 94531.5 Da    PI: 6.1401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11991genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.58.5e-172179357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+++ ++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  Tp57577_TGAC_v2_mRNA11991 21 KYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRENpvlsNIEPKQIKVWFQNRRCREKQ 79
                               56789*****************************9999*******************97 PP
2START84.32.6e-271612962135
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s++++g a+ra+g+v  ++a+ ve l d++  W +++++ e+    
  Tp57577_TGAC_v2_mRNA11991 161 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGCNGVAARACGLVSLEPAKIVELLKDRA-SWYRDCRSSEVFTMF 243
                                7899******************************************************6666655555.**********99999 PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqk 135
                                  g  g+++l +++++a+ +l++ Rdf+++Ry+  l+ g+ v++++S++    
  Tp57577_TGAC_v2_mRNA11991 244 PAGngGTIELVYTQTYAPMTLASaRDFWTLRYTTNLENGSIVVCERSLSGSGA 296
                                99999************9999999***********************986555 PP
3START49.71.1e-16337400139202
                                -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS
                      START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqr 202
                                 +++ Rae+lpSg+li+p+++g+s + +v+h +l++++++++lr+l++s+++ +++ + a+l++
  Tp57577_TGAC_v2_mRNA11991 337 AAQFERAEMLPSGYLIRPCEGGGSIIRIVDHLNLQAWSVPEVLRPLYESSTMVAQRLTIAALRY 400
                                56788*******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1591680IPR001356Homeobox domain
SuperFamilySSF466893.34E-151782IPR009057Homeodomain-like
SMARTSM003891.8E-131884IPR001356Homeobox domain
CDDcd000862.87E-152181No hitNo description
PfamPF000462.3E-142279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-172376IPR009057Homeodomain-like
CDDcd146867.22E-673112No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-477126No hitNo description
PROSITE profilePS5084825.29151413IPR002913START domain
SuperFamilySSF559617.91E-30156298No hitNo description
SMARTSM002344.0E-24160404IPR002913START domain
Gene3DG3DSA:3.30.530.207.6E-13160295IPR023393START-like domain
PfamPF018522.3E-24161298IPR002913START domain
SuperFamilySSF559617.91E-30337406No hitNo description
PfamPF018521.1E-13337401IPR002913START domain
PfamPF086701.3E-47724866IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MAMAVAQRDN SIERHIDSSG KYVRYTAEQI EALEKVYVEC PKPSSLRRQQ LIRENPVLSN  60
IEPKQIKVWF QNRRCREKQR KESSELQTLN RRLAAMNKLL TEENDRLQKQ VSQLVNENGF  120
MRQQVNTITA AASADGSDSA AATPPLSSMR DANSPAGFLS IAEETLAEFL SKATGTAVDW  180
VQMPGMKPGP DSVGIFAISQ GCNGVAARAC GLVSLEPAKI VELLKDRASW YRDCRSSEVF  240
TMFPAGNGGT IELVYTQTYA PMTLASARDF WTLRYTTNLE NGSIVVCERS LSGSGAGPNA  300
AAAAQFERAX XXXXXXXXXX XXXXXXXXXA GPNAAAAAQF ERAEMLPSGY LIRPCEGGGS  360
IIRIVDHLNL QAWSVPEVLR PLYESSTMVA QRLTIAALRY IRQVAQETSG EVVYGMGRQP  420
AVLRTFSQRL SRGFNDAVNG FNDDGWSVLN CDGAEGVTIA VNSIKNLSGT ANPASSLSLL  480
GGIVCAKASM LLQNITPAVL VRFLREHRSE WADFSVDAFS AASLKAGSYG YTGMRSTRFT  540
GNQAIMLLGH SIEHEEMLEV IRLEGHAPAH EDSFVSRDVH LLQLCTGIDE NAVGACSELI  600
FAPIDDMFPE DAPLVPSGFR IALLNSQQGD KQNSLTANRA LDLTVAPTTT HAAGDTCPNN  660
RCILTVAFQF PFETGLQDNV AAMARQYIRR VVSAVQALAT AISPSSANTA GEAKLSPGSP  720
EALTLAQWIC QSYSNYLEVP LLRSDSLIGD MVLKHLWHHP DAILCCSLKT VPVFIFANQA  780
GLDMLETTLV ALQDITLDKI FNDSARKNLI AYFAKLMQQG FACMPAGICM STMGRHASYD  840
QAVAWKVHAE DTSVHCLAFS FINWSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11991
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597252.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2K3PPK20.0A0A2K3PPK2_TRIPR; Homeobox-leucine zipper protein REVOLUTA-like (Fragment)
STRINGAES675030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]