PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1206

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 158aa MW: 18115.5 Da PI: 7.299

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1206	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124	7.5e-39	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk +rr+C++dC+++pyfpa++p++fa+vhk++G snv k+l++lpe re+a+++l+ eA++r++dPvyG+vg+++kl q Tp57577_TGAC_v2_mRNA1206 5 RCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLQQLPEYLREQAVNTLYLEARCRIQDPVYGCVGIVSKLYQ 89 6********************************************************************************** PP DUF260 86 qleqlkaelallkeel 101 q++ +++ela++++++ Tp57577_TGAC_v2_mRNA1206 90 QIHDTEVELAKIQTQI 105 *********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.085	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MIYGRCAACK SQRRRCPSDC IFSPYFPAND PQRFAYVHKI YGGSNVGKML QQLPEYLREQ 60 AVNTLYLEAR CRIQDPVYGC VGIVSKLYQQ IHDTEVELAK IQTQIAYHKL QNQQIEVESN 120 FNALSTVDAE TNLNFLPTQS NSMEQFQWPN QVPNLFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-34	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-34	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1206

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-50	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491406.1	1e-96	LOB domain-containing protein 23-like
Swissprot	P59467	3e-46	LBD23_ARATH; LOB domain-containing protein 23
TrEMBL	A0A2K3LTZ7	1e-114	A0A2K3LTZ7_TRIPR; LOB domain-containing protein 24-like
STRING	XP_004491406.1	4e-96	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	1e-48	LOB domain-containing protein 23

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1206