PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12077
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 261aa    MW: 28705.6 Da    PI: 6.6397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12077genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-1168114354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h e+ErrRR++iN  +++Lr l+P++     +K++Ka+ L ++++ +k+L
  Tp57577_TGAC_v2_mRNA12077  68 KNHREAERRRRNKINCHLAKLRGLVPSS-----TKMDKATLLAEVIRQVKEL 114
                                58*************************9.....9************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-1268116No hitNo description
PfamPF000102.4E-968114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1369123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1369124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.36E-6155196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDFSSDISRV VFNATSYNFG ASNEISRGGF VSSNSLVLDS EKGELVKSPP IIGDKKICDA  60
NKTLVALKNH REAERRRRNK INCHLAKLRG LVPSSTKMDK ATLLAEVIRQ VKELKNNANQ  120
ASKGYSIPID GDEVKVEVES CEDGGVDGSI FYKASICCDY QPELLSDLKQ TLDTLQLQLV  180
RAELSTLGDR VKNEFVYNCC KVDIYNIELC QLIASNVHQA LSSVLDKASA SMDYSLRAPH  240
PCNQLQQTST LSCNHDFCSC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462544.11e-153transcription factor bHLH106 isoform X1
TrEMBLA0A072V5E01e-151A0A072V5E0_MEDTR; Transcription factor
STRINGAES640201e-116(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-28bHLH family protein