PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12155
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22433 Da    PI: 10.2424
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.27.5e-121081372049
                                HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  20 ilKKAeELSvLCdaevaviifsstgklyey 49 
                                i+KKA+EL +LC+a va+iifs++gk + +
  Tp57577_TGAC_v2_mRNA12155 108 IFKKAYELFTLCGAYVALIIFSPSGKAFSF 137
                                9************************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004043.0E-5103118IPR002100Transcription factor, MADS-box
SMARTSM004320.0033108140IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-13108154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.545108141IPR002100Transcription factor, MADS-box
PfamPF003198.8E-12108137IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-5118139IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAALQGSAGS RRVRMWXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXFAIPIFK KAYELFTLCG  120
AYVALIIFSP SGKAFSFGYP DLYTVIDRYF SRVPPVNNNI RQFIEGFRST NVRDLNAQLT  180
QANDALDREK KAW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-21AGAMOUS-like 62