PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12227

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 201aa MW: 23630.1 Da PI: 8.8756

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12227	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.7	1.5e-25	66	114	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ +++s+yF++pi +AA+eL+v+lT LK++CR +GI+RWPhRk+ sl Tp57577_TGAC_v2_mRNA12227 66 MLTRKTISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSL 114 6899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	50	134	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-21	67	114	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MWYFENCTIA DFDLYDAKNL LPMGNEVDGG FYAENNVFSI SNNIVENNAK EIMKGKRCRE 60 ENSARMLTRK TISEYFYMPI SQAARELNVG LTHLKKRCRD LGIQRWPHRK LMSLQTLIKN 120 VQEQGDESDE KIRNAVEILQ KEMKKVEEKP DLQLEENTKR LRQACFKANY KKRRLMVMRL 180 MDHQHSSISE IESVNDHIRV *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12227

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013459288.2	1e-108	protein RKD2
Swissprot	Q9M9U9	2e-50	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2K3L4M1	1e-137	A0A2K3L4M1_TRIPR; RWP-RK domain protein
STRING	XP_004514420.1	2e-84	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-52	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12227