PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12237

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HSF

Protein Properties

Length: 181aa MW: 21105.2 Da PI: 8.8369

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12237	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.2	3.6e-35	23	116	1	103
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 aFl k+y+i++d++++e++sws+++nsfvv++++efa+ +Lp yFk +nf+SF+RQLn+YgF+k++d + we++++ Tp57577_TGAC_v2_mRNA12237 23 AFLVKTYDIVNDPNTNEIVSWSSTNNSFVVWNPTEFARVILPAYFKSNNFSSFTRQLNTYGFRKIHDGQ---------WEYANE 97 69*************************************************************9987.........** PP XXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkkse 103 +F k++k+ll++i+rk s+ Tp57577_TGAC_v2_mRNA12237 98 NFIKDQKHLLKNIQRKDSH 116 **************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.8E-53	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.52E-34	22	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.5E-36	22	113	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.5E-31	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEVALLSSFV VATRNEGDLX XAAFLVKTYD IVNDPNTNEI VSWSSTNNSF VVWNPTEFAR 60 VILPAYFKSN NFSSFTRQLN TYGFRKIHDG QWEYANENFI KDQKHLLKNI QRKDSHHPRD 120 YDELIEKINN HQKRTNLRIE RFQQRLDAME TMQKNLMNLF EKAIQNPSFV GQLSDKFASG 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-24	11	113	16	129	Heat shock factor protein 1
5d5v_B	9e-24	11	113	16	129	Heat shock factor protein 1
5d5v_D	9e-24	11	113	16	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12237

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027933565.1	9e-61	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-46	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2K3PKP7	1e-122	A0A2K3PKP7_TRIPR; Heat stress transcription factor a-5-like protein
STRING	XP_004504369.1	8e-60	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1592	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	6e-49	HSF family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12237

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]