PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12320

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

BBR-BPC

Protein Properties

Length: 228aa MW: 25063.7 Da PI: 10.4518

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12320	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	271.4	4.8e-83	66	227	133	301
GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCt 216 ++ +iee ++ke k kkr++++ p ++kakk++k +k++++ + + +k +kk++ l +ng+++D+s+lPvPvCsCt Tp57577_TGAC_v2_mRNA12320 66 NVDEIEE-LAVKKEGGKAKKRKSKAAPTTPKAKKPRK----QKDNSNVS--GQGVKPPKKTVALEINGIEMDISGLPVPVCSCT 142 2222222.23333334444444444444444444444....22222333..3679*************************** PP GAGA_bind 217 GalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 G ++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaa+Gy+++n++DLk+hWA+HGtnkfvti Tp57577_TGAC_v2_mRNA12320 143 GNPQQCYRWGCGGWQSACCTTNVSIYPLPMSVKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFANAIDLKTHWARHGTNKFVTI 226 ********************************************************************************** PP GAGA_bind 301 r 301 r Tp57577_TGAC_v2_mRNA12320 227 R 227 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.4E-103	1	227	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.3E-87	14	227	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEXXXXAAVE SSNPLNYGRD NWINQRPRFY NMQVNNPNYA VPPETSQGPS FPFIPSAVTD 60 PPRNENVDEI EELAVKKEGG KAKKRKSKAA PTTPKAKKPR KQKDNSNVSG QGVKPPKKTV 120 ALEINGIEMD ISGLPVPVCS CTGNPQQCYR WGCGGWQSAC CTTNVSIYPL PMSVKRRGAR 180 IAGRKMSQGA FKKVLEKLAA QGYNFANAID LKTHWARHGT NKFVTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12320

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT142072	1e-174	BT142072.1 Medicago truncatula clone JCVI-FLMt-4L16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158817.1	1e-115	hypothetical protein PHAVU_002G184500g
Swissprot	Q9SKD0	4e-82	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A2K3PLB5	1e-161	A0A2K3PLB5_TRIPR; Protein basic pentacysteine1-like
STRING	XP_007158817.1	1e-115	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-73	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12320