PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12329

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

ZF-HD

Protein Properties

Length: 86aa MW: 9316.44 Da PI: 8.8418

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12329	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.9	2.4e-33	16	73	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY eC+kNhAa++Gg+avDGC+Efm+s + egt+ al+CaACgCHRnFHRrev++e Tp57577_TGAC_v2_mRNA12329 16 RNVRYGECQKNHAANIGGYAVDGCREFMAS-NGEGTSGALTCAACGCHRNFHRREVQTE 73 689************************9.6668******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	8.0E-29	1	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.6E-30	17	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.8E-26	19	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.573	20	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048509	Biological Process	regulation of meristem development

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MKKRQVVAKT SSSITRNVRY GECQKNHAAN IGGYAVDGCR EFMASNGEGT SGALTCAACG 60 CHRNFHRREV QTEVVCEYSP PNYGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269\|PubMed:21455630}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12329

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147201	1e-109	AC147201.19 Medicago truncatula clone mth2-117n1, complete sequence.
GenBank	BT143007	1e-109	BT143007.1 Medicago truncatula clone JCVI-FLMt-2L7 unknown mRNA.
GenBank	CU024896	1e-109	CU024896.7 M.truncatula DNA sequence from clone MTH2-150P22 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003599659.1	4e-56	mini zinc finger protein 3
Swissprot	Q2Q493	7e-39	MIF3_ARATH; Mini zinc finger protein 3
TrEMBL	A0A2K3L0D3	2e-56	A0A2K3L0D3_TRIPR; ZF-HD homeobox-like protein
STRING	AES69910	1e-55	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	3e-41	mini zinc finger

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12329