PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12371

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 313aa MW: 35146.4 Da PI: 9.9116

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12371	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.8	1.1e-32	13	91	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++elvg+kktLvfykgrap+gek++Wvmheyr+ Tp57577_TGAC_v2_mRNA12371 13 AKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 91 456789***********************************9989999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.221	1	113	IPR003441	NAC domain
SuperFamily	SSF101941	1.19E-36	11	113	IPR003441	NAC domain
Pfam	PF02365	1.8E-15	19	91	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
LQFCYYFCGI GKAKMGTKEW YFFSLRDRKY PTGVRTNRAT NTGYWKTTGK DKEIFNSVTS 60 ELVGMKKTLV FYKGRAPRGE KSNWVMHEYR IHSKSTFRTN KQDEWVVSRV FRKSAGAKKY 120 PSSNPNRSVM MNPYNINLEV AHPNFNNNHN MPPTQMMQLG LDPATHFQLY GRNYINTAEV 180 LRAGIPMQQY SNLNFPVSSS STSPLGVGDV GGFTISGLNL NLGGSTSSQT ILRPMPSTVH 240 NAMHDFSSNM MMAGANSNIQ IAAENNNNNN NNNHNVGYGG GDQVNNANPN RYNMQGTMDH 300 CVDLDHYWPP SY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-33	12	119	65	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-33	12	119	65	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-33	12	119	65	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-33	12	119	65	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-33	12	119	68	174	NAC domain-containing protein 19
3swm_B	6e-33	12	119	68	174	NAC domain-containing protein 19
3swm_C	6e-33	12	119	68	174	NAC domain-containing protein 19
3swm_D	6e-33	12	119	68	174	NAC domain-containing protein 19
3swp_A	6e-33	12	119	68	174	NAC domain-containing protein 19
3swp_B	6e-33	12	119	68	174	NAC domain-containing protein 19
3swp_C	6e-33	12	119	68	174	NAC domain-containing protein 19
3swp_D	6e-33	12	119	68	174	NAC domain-containing protein 19
4dul_A	6e-33	12	119	65	171	NAC domain-containing protein 19
4dul_B	6e-33	12	119	65	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009709	7e-84	AP009709.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35C22, TM1767, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003588574.1	1e-159	protein ATAF2 isoform X1
TrEMBL	A0A2K3L562	0.0	A0A2K3L562_TRIPR; NAC domain-containing protein (Fragment)
STRING	AES58825	1e-158	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	4e-68	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12371