PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12415
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 206aa    MW: 23956.4 Da    PI: 6.1436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12415genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.8e-33311262102
                                HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
               HSF_DNA-bind   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                Fl k+y++le    +++  +++sw+e+gn fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk++++          weF
  Tp57577_TGAC_v2_mRNA12415  31 FLLKTYDLLEegseEKDGIKIVSWNEEGNGFVVWSPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKTSSKI---------WEF 105
                                9*********66555566789**********************************************98765.........*** PP

                                EESXXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  82 khksFkkgkkellekikrkks 102
                                kh++F+kg +++l +i+rkk 
  Tp57577_TGAC_v2_mRNA12415 106 KHEKFQKGCRHMLVEINRKKC 126
                                ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-4027124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-2728124IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3428119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2931124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-97385IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-98698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MELNFGTNSL DNFCSDQDGL SLKPLRCPAP FLLKTYDLLE EGSEEKDGIK IVSWNEEGNG  60
FVVWSPAEFS ELILPRYFKH NNFSSFIRQL NTYGFKKTSS KIWEFKHEKF QKGCRHMLVE  120
INRKKCEPSV FPQYLKSCSE ENAMTSSSVE ESINNHEILM EENKNLKKER LELQMQIAEC  180
KALEMKLLDC LSQYMDTSQN KVRRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-16291242104Putative transcription factor
5d5x_B1e-16291242104Putative transcription factor
5d5x_E1e-16291242104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12415
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457050.11e-128heat stress transcription factor B-2a
TrEMBLG7ZZ891e-127G7ZZ89_MEDTR; Heat shock transcription factor
STRINGAES845271e-128(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-36heat shock factor 4