PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12515
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 338aa    MW: 36813.6 Da    PI: 5.688
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12515genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.33.8e-14169221459
                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                 kr rrk +NRe+ArrsR+RK+a ++ Le  v++L  eN +L    ++l++ +++ 
  Tp57577_TGAC_v2_mRNA12515 169 MKRLRRKVSNRESARRSRRRKQAHLADLEVQVEQLRLENASLF---KQLTDASQQF 221
                                79**************************************999...5555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-14166230IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-11168222No hitNo description
PROSITE profilePS5021711.254168231IPR004827Basic-leucine zipper domain
PfamPF001708.6E-12169220IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.3E-11170220No hitNo description
CDDcd147029.51E-8171222No hitNo description
PROSITE patternPS000360173188IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MESKWSNILT PSSIFTSFED LKWITTEFDH ELFTKQVQTP NESANDNDVK PCRVDPFIGV  60
GDVCSGNIAG AADFRNLDAV TSFSTCGEPT NNTLVCSKNL TPKHSTITAT IESQSSISAT  120
VTSPVSANKP SSRENQAKGV TTTSGSSRDP SDEDDEAGPC EQSTNPIDMK RLRRKVSNRE  180
SARRSRRRKQ AHLADLEVQV EQLRLENASL FKQLTDASQQ FRDANTNNRV LKSDVEALRA  240
KVKLAEDMVT RGTLPTFNNH LLQNQNQLNT TLPQLNASNL RCMTHVSPTI TVHGNEASYG  300
VSGQNSAIGL GDFDISCSDF NNGVNSDAVS SLTSIWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172188RRKVSNRESARRSRRRK
2182189RRSRRRKQ
3184189SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2023801e-91AC202380.14 Medicago truncatula clone mth2-160m23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588595.10.0basic leucine zipper 9
SwissprotQ6H5008e-61RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLG7I5450.0G7I545_MEDTR; BZIP transcription factor
STRINGAES588460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.17e-46basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]