PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12577
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 245aa    MW: 27573.6 Da    PI: 4.454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12577genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-085282347
                               -HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                               +W+ Ia++++ gRt++++k++w++ 
  Tp57577_TGAC_v2_mRNA12577  5 RWSQIAARLP-GRTDNEIKNFWNST 28
                               6*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.016133IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11334IPR009057Homeodomain-like
SuperFamilySSF466896.77E-8438IPR009057Homeodomain-like
PfamPF002492.5E-6528IPR001005SANT/Myb domain
CDDcd001672.20E-6529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
LNNLRWSQIA ARLPGRTDNE IKNFWNSTLK KRLKTNNNST PSPNNSDSSD QPILDVFDMK  60
NNVIMPINEQ ELMTLCMDSS SSTSSSSMQS MHMHAMVLAD QFDPFSLLST NTRYDMTTSF  120
HDHDMPTSLT QQVGMVNDIG LSDDYGILDA NKMGLLENDF ELPPLESRIS IENKSAPIDH  180
NGKNHINHFN NSCFNNTNHI QNSNVEDLFG FGNHGQGENL RMGEWDLEGL MQDISYLPPL  240
DFQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834LKKRLKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12577
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459180.11e-111transcription factor MYB83
TrEMBLA0A072UVZ01e-110A0A072UVZ0_MEDTR; Myb transcription factor
STRINGXP_004499875.19e-99(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-17myb domain protein 83