PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12733
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 162aa    MW: 18319.1 Da    PI: 9.8438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12733genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27102153252
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEE CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitY 52 
                                 Dgy+WrKYGqK +kgs++pr+YY+Ct+  gCp++k ver+++dpk++++ Y
  Tp57577_TGAC_v2_mRNA12733 102 ADGYQWRKYGQKLIKGSPYPRGYYKCTTVkGCPARKMVERAKDDPKMMVVRY 153
                                6**************************988********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF519059.71E-17684IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.602.0E-23688IPR023753FAD/NAD(P)-binding domain
PfamPF012661.0E-16886IPR006076FAD dependent oxidoreductase
PROSITE profilePS5081126.70496153IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-2797153IPR003657WRKY domain
SuperFamilySSF1182902.62E-2399154IPR003657WRKY domain
SMARTSM007744.7E-29101161IPR003657WRKY domain
PfamPF031063.8E-23103153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDQDSQFDVI IIGAGVMGSS TAYQAAKRGL KTLLLEQFDF LHHRGSSHGE SRTIRTTYLQ  60
PHYYPLVIQS FKLWKEAQAQ VGYERTVRVA APINDNIADI PADGYQWRKY GQKLIKGSPY  120
PRGYYKCTTV KGCPARKMVE RAKDDPKMMV VRYLVVFEGP P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18991531568Probable WRKY transcription factor 4
2lex_A1e-18991531568Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12733
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603550.14e-45probable sarcosine oxidase
SwissprotQ9SJA72e-33SOX_ARATH; Probable sarcosine oxidase
TrEMBLA0A2K3NBZ65e-51A0A2K3NBZ6_TRIPR; Sarcosine oxidase
STRINGAES738011e-44(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-30WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Goyer A, et al.
    Characterization and metabolic function of a peroxisomal sarcosine and pipecolate oxidase from Arabidopsis.
    J. Biol. Chem., 2004. 279(17): p. 16947-53
    [PMID:14766747]
  2. Gong Q,Li P,Ma S,Indu Rupassara S,Bohnert HJ
    Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana.
    Plant J., 2005. 44(5): p. 826-39
    [PMID:16297073]