PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1284
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SAP
Protein Properties Length: 482aa    MW: 53266.2 Da    PI: 7.2823
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1284genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP730.71.3e-22214811455
                       SAP   1 mssssssssseseegseggeggdass................gesegpsssrqraanevwpePflealatqvaidasrslGrlaa 69 
                               msssssssss+s+  s+ ++++ + +                +e+e+psssrqra+nevw eP++ealatqvaidas+++Grl+a
  Tp57577_TGAC_v2_mRNA1284   1 MSSSSSSSSSSSSPLSSLQQPSSSITpsnvvdipgpsntnndDEFEAPSSSRQRAMNEVWLEPVVEALATQVAIDASHYHGRLSA 85 
                               78888888777776666666655554778999*********999***************************************** PP

                       SAP  70 asalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCr 154
                               asala++fqvcstwr+vsrsdllwqrltrriWrrt++lrdtW+ eyiy+hrtarnf+t+r+++v++q+dp     d++ +al+Cr
  Tp57577_TGAC_v2_mRNA1284  86 ASALAIIFQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPG----DHH-QALICR 165
                               **********************************************************************6....545.8***** PP

                       SAP 155 clalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgag....aaaarr 235
                               cl+lsd++la+Gf+dG+vrlf+l+t +h++tf+++h++++G+fs+++sGivi++s+lvfa+ldGdi+++ i+g+      ++arr
  Tp57577_TGAC_v2_mRNA1284 166 CLTLSDTHLACGFVDGTVRLFNLNTGAHITTFWSNHGHLFGPFSQSISGIVITNSSLVFARLDGDIYMSLINGPRpipgPIPARR 250
                               ************************************************************************975555599**** PP

                       SAP 236 allGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCt 320
                               a++Gdvvn+G+lv+faG++r+w+Gl+aG++G af+iWda+te++vfvGGsltdPe+v+GWhmltel+e vGrvrvtere++vaCt
  Tp57577_TGAC_v2_mRNA1284 251 AIIGDVVNNGVLVEFAGCNRFWIGLFAGHAGGAFQIWDAQTEQRVFVGGSLTDPESVQGWHMLTELVEPVGRVRVTEREFVVACT 335
                               ************************************************************************************* PP

                       SAP 321 slrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyagg 404
                               ++rlv+f+lrn++++lr+  +++G++vssld+s+e++vvv+++Gv+tvrrv n+e+v+rfr+rg + rg+l+C+n+gy+++y++g
  Tp57577_TGAC_v2_mRNA1284 336 TSRLVCFNLRNPEILLRDMGSTTGFMVSSLDISHEVFVVVERNGVGTVRRVGNFERVSRFRLRGsWLRGLLVCMNLGYVITYSSG 420
                               **********************************************************************************987 PP

                       SAP 405 ..vlrvWeiekkeg.ylyslrervg.......evnalvaddrhvavsssdgtihlldfgaq 455
                                 +lrvW+i++ ++ +++++++r +       + n++va+++hva+ss+d++ihlldf++q
  Tp57577_TGAC_v2_mRNA1284 421 sgLLRVWDIHEPTArLCITIAVRDDggeqghvHGNSMVANQTHVAISSNDSSIHLLDFSVQ 481
                               77*********9888********98899998889*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813833.71E-782141IPR001810F-box domain
Gene3DG3DSA:1.20.1280.503.0E-688150No hitNo description
Gene3DG3DSA:2.130.10.104.3E-13157223IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.38E-14161231IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.3E-13275478IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.38E-14285477IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSSSSSSSSS SSSPLSSLQQ PSSSITPSNV VDIPGPSNTN NDDEFEAPSS SRQRAMNEVW  60
LEPVVEALAT QVAIDASHYH GRLSAASALA IIFQVCSTWR EVSRSDLLWQ RLTRRIWRRT  120
YRLRDTWQLE YIYWHRTARN FTTGRHALVV PQYDPGDHHQ ALICRCLTLS DTHLACGFVD  180
GTVRLFNLNT GAHITTFWSN HGHLFGPFSQ SISGIVITNS SLVFARLDGD IYMSLINGPR  240
PIPGPIPARR AIIGDVVNNG VLVEFAGCNR FWIGLFAGHA GGAFQIWDAQ TEQRVFVGGS  300
LTDPESVQGW HMLTELVEPV GRVRVTEREF VVACTTSRLV CFNLRNPEIL LRDMGSTTGF  360
MVSSLDISHE VFVVVERNGV GTVRRVGNFE RVSRFRLRGS WLRGLLVCMN LGYVITYSSG  420
SGLLRVWDIH EPTARLCITI AVRDDGGEQG HVHGNSMVAN QTHVAISSND SSIHLLDFSV  480
Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617930.10.0transcriptional regulator STERILE APETALA
TrEMBLA0A2K3PMG10.0A0A2K3PMG1_TRIPR; Transcriptional regulator STERILE APETALA
STRINGAET008890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-104SAP family protein