PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12860
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21180.4 Da    PI: 10.0555
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12860genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-221662147
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                               k+i+n++  qvtfskRrng++KKA+EL  LC+a va+iifs+tgk++
  Tp57577_TGAC_v2_mRNA12860 16 KKISNERSMQVTFSKRRNGLFKKAHELFALCGAYVALIIFSPTGKVF 62
                               68*******************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-29867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.777868IPR002100Transcription factor, MADS-box
CDDcd002655.74E-36977No hitNo description
SuperFamilySSF554551.06E-26979IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-211030IPR002100Transcription factor, MADS-box
PfamPF003192.7E-231763IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-213045IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-214566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSGGKKTRGR QKIEIKKISN ERSMQVTFSK RRNGLFKKAH ELFALCGAYV ALIIFSPTGK  60
VFSIGYPDLY TVIDRYLSRV PPVNNNVRQF IEAFRSTNVR ELNAQLTLAN DALDREKRRG  120
DDLSRLCKMI EDPSWWASPV DGLNKDQLEL LKMALEELNK NIVEPNDRLE ILGAPTQTQQ  180
AQMSPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-16982275MEF2C
5f28_B4e-16982275MEF2C
5f28_C4e-16982275MEF2C
5f28_D4e-16982275MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496799.17e-80agamous-like MADS-box protein AGL62
TrEMBLA0A2K3NHW41e-135A0A2K3NHW4_TRIPR; Agamous-like mads-box protein agl62-like
STRINGXP_004496799.13e-79(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-42AGAMOUS-like 62