PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12886
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 107aa    MW: 12366.1 Da    PI: 9.578
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12886genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-091658444
                               S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                               WT eE  ++ da + +G++   +W  +a+ +g g++  ++k ++
  Tp57577_TGAC_v2_mRNA12886 16 WTREENRRFEDALAVYGPEdpnRWQHVANAVG-GKSVQEVKMHY 58
                               *****************99*************.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-71264IPR001005SANT/Myb domain
CDDcd001679.55E-81662No hitNo description
Gene3DG3DSA:1.10.10.602.0E-51665IPR009057Homeodomain-like
PROSITE profilePS500906.7831662IPR017877Myb-like domain
PfamPF002491.6E-71658IPR001005SANT/Myb domain
SuperFamilySSF466893.44E-121669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
LKKIHTNTNI IHIMGWTREE NRRFEDALAV YGPEDPNRWQ HVANAVGGKS VQEVKMHYEI  60
LKEDLIRIEH DQIPLPTYKG GAGININNGR KLFGDEQRRM RNLNIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-19161061193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12886
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462127.25e-59protein RADIALIS-like 1
SwissprotQ1A1732e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A396IZP41e-57A0A396IZP4_MEDTR; Putative transcription factor MYB-HB-like family
STRINGGLYMA04G03360.13e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-28RAD-like 6