PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13356
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 106aa    MW: 11970.5 Da    PI: 9.6001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13356genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.31.4e-2798454128
                        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +e+e +fFs++++ky++++r +r+tk gyWkatg+dk++ s+  +  +gl+ktLvfy+g++p+g++t+W++heyrl
  Tp57577_TGAC_v2_mRNA13356   9 DEQERHFFSSKESKYRNSNRMSRTTKCGYWKATGSDKRISSStCNGIIGLRKTLVFYEGKSPNGSRTNWILHEYRL 84 
                                56799**********************************99877778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.841105IPR003441NAC domain
SuperFamilySSF1019412.62E-27887IPR003441NAC domain
PfamPF023657.1E-131384IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
LIDNIGGCDE QERHFFSSKE SKYRNSNRMS RTTKCGYWKA TGSDKRISSS TCNGIIGLRK  60
TLVFYEGKSP NGSRTNWILH EYRLINVESP TNSTQVIISC LIFIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-24110361163NO APICAL MERISTEM PROTEIN
1ut4_B8e-24110361163NO APICAL MERISTEM PROTEIN
1ut7_A8e-24110361163NO APICAL MERISTEM PROTEIN
1ut7_B8e-24110361163NO APICAL MERISTEM PROTEIN
3swm_A9e-24110364166NAC domain-containing protein 19
3swm_B9e-24110364166NAC domain-containing protein 19
3swm_C9e-24110364166NAC domain-containing protein 19
3swm_D9e-24110364166NAC domain-containing protein 19
3swp_A9e-24110364166NAC domain-containing protein 19
3swp_B9e-24110364166NAC domain-containing protein 19
3swp_C9e-24110364166NAC domain-containing protein 19
3swp_D9e-24110364166NAC domain-containing protein 19
4dul_A8e-24110361163NAC domain-containing protein 19
4dul_B8e-24110361163NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13356
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630552.11e-54NAC domain-containing protein 83
SwissprotQ9FY938e-32NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2Z6NNX14e-55A0A2Z6NNX1_TRISU; Uncharacterized protein
STRINGAET050285e-54(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-34NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]