PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13379
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 509aa    MW: 55512.3 Da    PI: 7.5828
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13379genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.11.4e-16216269356
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                                ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l   ++++
  Tp57577_TGAC_v2_mRNA13379 216 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLVKRLTDVSQKY 269
                                579*****************************************9988877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.2E-13213269No hitNo description
SMARTSM003381.5E-20214278IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.507216268IPR004827Basic-leucine zipper domain
PfamPF001704.4E-15217268IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.22E-12218269No hitNo description
CDDcd147022.47E-6219269No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
PfamPF124981.9E-16285330IPR020983Basic leucine-zipper, C-terminal
PRINTSPR015063.3E-6428448IPR003998Twin-arginine translocation protein TatB-like
HamapMF_0023618.393428495IPR006312Sec-independent protein translocase protein TatA/E
TIGRFAMsTIGR014114.5E-19430476IPR006312Sec-independent protein translocase protein TatA/E
PfamPF024162.6E-18431480IPR003369Sec-independent protein translocase protein TatA/B/E
PRINTSPR015063.3E-6448467IPR003998Twin-arginine translocation protein TatB-like
PRINTSPR015063.3E-6467485IPR003998Twin-arginine translocation protein TatB-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009306Biological Processprotein secretion
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008565Molecular Functionprotein transporter activity
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDRVFSVDEI PDHLWSPQIH DSGGATEESS NMSRSASEWA FQRFLQEAAT SPLSSSVADE  60
NVVDTPPLPT KDDAAVLKNG PPPPHPPPVT VDSEEYRRAV LKSKLSLACA AVAMTRGSLT  120
KSQDLATFSE NGSQSSNPTQ VGPQPSFEGS ARPGNDPPIL QDKDAKVPPA IPSIPPVQKK  180
TVVATRPSTS GSSRELSDDD EAEGETYMND NTDPTDVKRV RRMLSNRESA RRSRRRKQAH  240
LTELETQVSQ LRGENSSLVK RLTDVSQKYT DSAVDNRVLK ADVETLRAKV KMAEETVKRI  300
TGLNPMFHVM PPDISSMGMP SFDGSPSDXX XXXXXXXXXX XLCKTIHIIT SINPHQIILC  360
RTPAANRIKP KMETTLSLSS SSFIPRLPIS SSYSSLSFLA RNSNTSSLLL NKGRIKTRRT  420
NDFTCKAFFG LGVPELVVIA GVAALVFGPK KLPEVGRSIG QTVKSFQQAA KEFEAELKKE  480
PNSEEEISVA NDKVEQDIKV SSTKDDSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230237RRSRRRKQ
2232237SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13379
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468984.11e-163light-inducible protein CPRF2
SwissprotQ990908e-93CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A072VN131e-162A0A072VN13_MEDTR; Putative transcription factor bZIP family
STRINGXP_004495799.11e-158(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-70bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]