PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13420
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRF
Protein Properties Length: 644aa    MW: 69994.1 Da    PI: 8.4567
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13420genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.6e-24205249145
                        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Tp57577_TGAC_v2_mRNA13420 205 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 249
                                79****************************************985 PP
2QLQ59.11.3e-20135171137
                        QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                ++FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k
  Tp57577_TGAC_v2_mRNA13420 135 GPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIKK 171
                                59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12135171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.07136171IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-14136169IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847205249IPR014977WRC domain
PfamPF088791.3E-20206248IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MDLGGVSLDG LVNSDPEQKN KWYNGSGLLK QERSGTCTED ELRSFKLAKT TDQQQQQRNS  60
VSLLRSNATT MFSDGQHQQQ MLSFSTPNPK SDSFLVDKTA QNATLSYAYL PMSGYNRNTG  120
YSSGSMHGGL SGVRGPFTPS QWMELEHQAL IYKYITANVA VPHHLLIPIK KALDSAGLSS  180
YSTALLRPNA LGWGGFHLGY SNNTDPEPGR CRRTDGKKWR CSRDAVVDQK YCERHMNRGR  240
HRSRKPVEGQ SGQALTTGGT TNSTATTNAT STITQSGSSK QINVAAVTAA VAASPSSSIV  300
IPGGNTASNT LSFAHQEHSK NMNNLIGQDN ASSAANTINR MFMNNKENNS TSERMQDVPA  360
LPMLPPTLEL KPKENHPFMI QKQNIPYDES SRNNEFGFVT SDSLLNPSQK PPTLLGTRAF  420
GSSSQNPTNR DTGSQNSLRH FIDDFPKTHS DHHNRSGGFS WPELDMQSDR IQLSISTPMT  480
SSDFMSFNSS GTNEKLTLSP LRLSREIDPI QMGLGVGTGS STLNNTNESS NPSTNAATRQ  540
TNWIPITWES SMGGPLGEVL HLSSSIAYNA SDDHYGGGGG SNNNSAALNL MTDGWDNHNS  600
PPMGXXXXXX XXXXXXXXVA PVVVQGPRTI RQLKKELVCA MIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150367e-61AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465961.10.0growth-regulating factor 1
TrEMBLA0A2K3MN600.0A0A2K3MN60_TRIPR; Growth-regulating factor 6-like protein
STRINGXP_004498953.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-80growth-regulating factor 2