PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13476
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 190aa    MW: 22122.6 Da    PI: 4.882
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13476genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.51.3e-231575259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                               +Dgy+WrKYGqK++ ++++ rsYYrC+++   +C + k+v+r + dp +  +tY g+Hn++
  Tp57577_TGAC_v2_mRNA13476 15 EDGYEWRKYGQKKIMNAKYIRSYYRCSYKneqDCAAMKQVQRIQVDPPLYRTTYYGHHNCK 75
                               8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.725977IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-24976IPR003657WRKY domain
SuperFamilySSF1182904.32E-231176IPR003657WRKY domain
SMARTSM007746.1E-331476IPR003657WRKY domain
PfamPF031062.7E-231575IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
SNAITWEKDS SILIEDGYEW RKYGQKKIMN AKYIRSYYRC SYKNEQDCAA MKQVQRIQVD  60
PPLYRTTYYG HHNCKTSNLD ITSLEPNNTS SMFINFNDSF QTKEQYPSFS SSSFSKSTKQ  120
EPIEVINIPY DHIAENQLIS LDYPLSCDYE LEFDYLRHAT MLSSTQSVEF HDVYEPCSLD  180
FDSKSCFGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-181475869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477135e-56AC147713.21 Medicago truncatula clone mth2-138b11, complete sequence.
GenBankAC1916005e-56AC191600.2 Medicago truncatula chromosome 2 BAC clone mth4-39h3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632081.15e-85probable WRKY transcription factor 70
TrEMBLG7IR235e-85G7IR23_MEDTR; WRKY family transcription factor
STRINGAES665449e-86(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-24WRKY DNA-binding protein 38