PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13486
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 151aa    MW: 17047.8 Da    PI: 9.4528
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13486genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA28.12.8e-096180120
                       GATA  1 CsnCgttkTplWRrgpdgnk 20
                               Cs C+t++TplWR+gp g+k
  Tp57577_TGAC_v2_mRNA13486 61 CSECKTKSTPLWRKGPKGPK 80
                               ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.6735586IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-45597IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-55579No hitNo description
Gene3DG3DSA:3.30.50.104.2E-85981IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.3E-76180IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MREEKRARAE KRAKAKAKAK AIAEKKIKKS SSTVKKTFGC CMMRAENDYT LLENHAKGMV  60
CSECKTKSTP LWRKGPKGPK VVWAIGGATR YDWGDVSLFL WDVKGVKEET HGGCECDALF  120
DKWYDLENTE QLIIILYTLI ATHHIYICSN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13486
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-06GATA family protein