PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13537
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family DBB
Protein Properties Length: 292aa    MW: 32115.6 Da    PI: 4.8173
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.6e-07447542
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Tp57577_TGAC_v2_mRNA13537  4 QCNVCEGAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47
                               7******99*********************66899999999986 PP
2zf-B_box28.33.5e-095495338
                   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                               ++kC+ ++e    +fC +++ llC++C l++H        H+
  Tp57577_TGAC_v2_mRNA13537 54 MPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTAnafvsgHQ 95
                               799*******9*********************5455666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
CDDcd000215.66E-9347No hitNo description
SMARTSM003363.7E-11447IPR000315B-box-type zinc finger
PfamPF006431.8E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1865299IPR000315B-box-type zinc finger
SMARTSM003364.5E-155299IPR000315B-box-type zinc finger
PfamPF006435.8E-75495IPR000315B-box-type zinc finger
CDDcd000212.30E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKIQCNVCEG AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSTS SSHMPKCDIC  60
QEAFGYFFCL EDRALLCRKC DLAIHTANAF VSGHQRFLLT GVKVGLEDAG ASSNSMKSDS  120
GEKVSDTKSS SVSRKVSTMP QSSEYNEMFP TDQGGRVMEF PPAKVSYGGG SSSGNMSQWT  180
IDEFFGVNDF SQNYNYMDGS SRADSGKLDD SDSPVLRSNE EEMEYDDYMD RVPDSSWTVP  240
QIPSPPTASG LYWPKNPRYA SDNALFVPDI GISTMQHPQN SSNFSRPWNH H*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13537
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464521.10.0B-box zinc finger protein 22
SwissprotQ9SYM21e-88BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2K3ND890.0A0A2K3ND89_TRIPR; Putative salt tolerance-like protein
STRINGXP_004488990.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-84light-regulated zinc finger protein 1