PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13605
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 299aa    MW: 32850.6 Da    PI: 8.9067
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13605genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18168201134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                Cs C+tt+TplWR+gp g+k+LCnaCG+++rk +
  Tp57577_TGAC_v2_mRNA13605 168 CSDCNTTTTPLWRSGPMGPKSLCNACGIRQRKAR 201
                                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-20162222IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-13163202No hitNo description
PROSITE profilePS5011412.664166198IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15166201IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.60E-14167204No hitNo description
PROSITE patternPS003440168193IPR000679Zinc finger, GATA-type
PfamPF003202.3E-16168201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
XXXXXXXSLL QGQNQFINFS PINQDPPTLF NLLGGDYTDQ DHDHHQDHGK LIFEQDGSSS  60
NNHEQVYNNS SSDPSSARDT NLSSSLEEES GHGSEKWMSS KMRLMKKMIN TTTATTDDAT  120
KTPIMRSSNN SAADKQITTT PMMNPSNYLR QRSPHSNNSG GNNIIRVCSD CNTTTTPLWR  180
SGPMGPKSLC NACGIRQRKA RRAMAEAANG LATPTKTNKE KKPRVNNSTQ FKKKSNSITT  240
TTPTTSAGSS SQDVKKLESY ALNLRNNSDF EDMFPSDEAT EAALLLMRIS SGKLFNLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588994.13e-94GATA transcription factor 21
TrEMBLA0A2Z6NDJ71e-124A0A2Z6NDJ7_TRISU; Uncharacterized protein
STRINGAES592451e-93(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-22cytokinin-responsive gata factor 1