PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13681
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 331aa    MW: 36044.8 Da    PI: 7.8003
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13681genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.29.8e-4356132177
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                +Cqv+gC+ dl++ak y++rhkvC++hsk+p+v+vsgl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  Tp57577_TGAC_v2_mRNA13681  56 MCQVQGCKLDLTDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPP 132
                                6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3450118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.95854131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-4055136IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3257130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDSGNSSSEE SSLNGLKFGQ RIYFEDTTAL ATASSSGSTS SKKVRSVSVQ HSQPPMCQVQ  60
GCKLDLTDAK AYYSRHKVCS MHSKSPTVTV SGLQQRFCQQ CSRFHQLAEF DQGKRSCRRR  120
LAGHNERRRK PPPNSLLTSR FARLSSSVFD NSGRGGSFLM EFDSHQKLSL KNALPSHGNQ  180
TTTLGWPWPD NSESPSDNLF LQGSVGGTSF AGVRHPPEEN YTGVTDSSCA LSLLSNQTWG  240
SSATSHELNN MLSFNNGTPM TQLATSSPGL AMHQLPNSSC CFKDIDHGNL SHEAVPDLVP  300
GHISQPLDSQ LRGELDVEHS RAYESSQWSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31561301084squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13681
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1578917e-75AC157891.3 Medicago truncatula chromosome 7 clone mte1-1i2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493567.11e-172squamosa promoter-binding-like protein 9
TrEMBLA0A1S2XRU31e-171A0A1S2XRU3_CICAR; squamosa promoter-binding-like protein 9
STRINGXP_004493567.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-59squamosa promoter binding protein-like 9