PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13851
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 208aa    MW: 23424 Da    PI: 8.6677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13851genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17118168255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdps   k  r++lg+f  + +Aaka++ a+ +++g
  Tp57577_TGAC_v2_mRNA13851 118 HYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFNNEIDAAKAYDCAAFRMRG 168
                                8********.**********854..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-31117177IPR001471AP2/ERF domain
CDDcd000188.24E-28117176No hitNo description
PfamPF008475.5E-12118168IPR001471AP2/ERF domain
SMARTSM003801.3E-33118182IPR001471AP2/ERF domain
PROSITE profilePS5103223.617118176IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22118178IPR016177DNA-binding domain
PRINTSPR003674.5E-13119130IPR001471AP2/ERF domain
PRINTSPR003674.5E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTTSEETSSL KLLSQHLLED ISDSFFTNLS SVKLEYTSSS SPSPSSEIDL DSYFSEQNSF  60
LEILGFEADT KFIDFSSHDK VQNMKEERPF EETHNKNSNS AEPIVLEKKE QRCYGGKHYR  120
GVRRRPWGKF AAEIRDPSRK GSRVWLGTFN NEIDAAKAYD CAAFRMRGQK AILNFPLEAG  180
KANPKPNNSV SGRKKRIHQR DAATSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-30116177364ATERF1
3gcc_A4e-30116177364ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13851
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591657.11e-112ethylene-responsive transcription factor ERF106
TrEMBLA0A2K3MX511e-150A0A2K3MX51_TRIPR; Ap2/erf domain-containing transcription factor
STRINGAES619081e-111(Medicago truncatula)
STRINGAES842381e-111(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-38ERF family protein