PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14081
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24921.3 Da    PI: 6.774
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14081genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.11.8e-161156348
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                               i n+s+r  tf +R+ng++KK  E+S+LC++e++ iifs+++ l e
  Tp57577_TGAC_v2_mRNA14081 11 ITNDSKRRGTFNRRKNGLIKKFDEISTLCGIEACAIIFSQNDPLPE 56
                               89**************************************988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.409156IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-23395IPR002100Transcription factor, MADS-box
CDDcd002661.39E-29385No hitNo description
PRINTSPR004045.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MIRKKVNLAY ITNDSKRRGT FNRRKNGLIK KFDEISTLCG IEACAIIFSQ NDPLPEVWPS  60
PLGVQEVLSR FRSLSKMEQS KMMLNQESFL KQKIQKGQEQ LKKQRNENKR NEMTYLMFQC  120
LDSAQIIYTV GVNDLIALSW MIDHNLKQTE RCINETQANE VVENHAENVI GRESGMENNV  180
DAMQSEHWSL DFTNNNFGDV LPFGNGDNVP NGLWPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460436.11e-109agamous-like MADS-box protein AGL80
TrEMBLA0A2K3N1E71e-159A0A2K3N1E7_TRIPR; Agamous-like mads-box protein agl80-like
STRINGXP_004500454.11e-99(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-46AGAMOUS-like 80