PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14093
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 304aa    MW: 35324.7 Da    PI: 6.3644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14093genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08530328
                               SS-HHHHHHHHHHHHHTTTT-HHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIa 28
                               +WT+eEd ll+++++q+G g W++++
  Tp57577_TGAC_v2_mRNA14093  5 AWTEEEDHLLKKCIQQYGEGKWHRVP 30
                               7**********************997 PP
2Myb_DNA-binding40.46.7e-13106172147
                                TSSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrwqky 47 
                                rg++  eE e +v+++k+lG+                      +W++Ia +++ gRt++++k++w+ +
  Tp57577_TGAC_v2_mRNA14093 106 RGNFADEEVEMIVKLHKLLGNSmdpwlmdfkliqlflffflsfRWSLIAGRLP-GRTANDVKNYWNCH 172
                                89999****************9*******************************.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.973144IPR017930Myb domain
SMARTSM007178.5E-52102IPR001005SANT/Myb domain
PfamPF002492.6E-6530IPR001005SANT/Myb domain
CDDcd001671.68E-4529No hitNo description
Gene3DG3DSA:1.10.10.607.7E-15533IPR009057Homeodomain-like
SuperFamilySSF466891.08E-5632IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-158395IPR009057Homeodomain-like
SuperFamilySSF466894.49E-1586181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-1096117IPR009057Homeodomain-like
PROSITE profilePS5129415.362101177IPR017930Myb domain
SMARTSM007173.0E-8105175IPR001005SANT/Myb domain
PfamPF002491.3E-9106170IPR001005SANT/Myb domain
CDDcd001671.71E-6108173No hitNo description
Gene3DG3DSA:1.10.10.603.2E-16118173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIQQ YGEGKWHRVP LLAVDPTSVL RLLLSMTVIN SFVLHAKNIN  60
CMKLLFMRLI LLNTFFFKYW FVEGLNRCRK SCRLRWLNYL RPNIKRGNFA DEEVEMIVKL  120
HKLLGNSMDP WLMDFKLIQL FLFFFLSFRW SLIAGRLPGR TANDVKNYWN CHLSKKVNAV  180
EADQEGSQLS KDVQMIRPQP RNIGSSSTMK RRSQVESPSD QVLVEQESDI TKFDANGKNN  240
MIESQQDMMM YSCLDQQGMF GEFPMDFQLE GFEAMVSGGE GSSNQWNWDD LLLDMDMYND  300
FTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-1711774159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-1711774159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0522791e-165BT052279.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-G-24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442371.11e-139transcription factor MYB1
TrEMBLA0A2K3NSC71e-157A0A2K3NSC7_TRIPR; Transcription factor MYB 113-like protein
STRINGGLYMA18G41520.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-42myb domain protein 113