PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14114

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 221aa MW: 24863.3 Da PI: 8.4893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14114	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.4	3.1e-10	112	177	22	91
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + ++ t+ Cs+ k +++k+ ++++ t+t+Cka+l+ ++ +g+ ++++ leHnHel+p Tp57577_TGAC_v2_mRNA14114 112 N-GDDGKRYFTLGCSRARKYVSNSKN---LLKPNPITKTQCKARLNACMSLEGTITISSVILEHNHELSP 177 3.33336677899*9999999888...899**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-7	114	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
LEKKPPHLLS RVNVSPFAEH PICSNHICCC HYHFCSCRLV AATHNPNFLF CSIHLQQLNI 60 QLITMAERVA SSFDEETSEG SKKNDDILDK KLPYDGENPR AGMTFSSEDE KNGDDGKRYF 120 TLGCSRARKY VSNSKNLLKP NPITKTQCKA RLNACMSLEG TITISSVILE HNHELSPTKA 180 RYFRCNKNLG PYMKRRLELN DQAGINVSRN FRSLVVEADG *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14114

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024626806.1	2e-57	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A392M6P6	3e-90	A0A392M6P6_9FABA; Protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_004496070.1	5e-50	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27077	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-06	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14114