PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14116
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 3102aa    MW: 346470 Da    PI: 7.8067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14116genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.57.9e-17231224387128
                        NAM    7 FhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82  
                                 F+ td+el++ +L +k+++k+l+   +i e d++ +  +P ++ +     ++ + k++yfFs+ +kk+at++r  r++ +g 
  Tp57577_TGAC_v2_mRNA14116 2312 FKVTDDELLQSFLYNKIHNKPLPDYMTILEYDLFGTvkNPCEIWEefaaFHSYSGKDLYFFSTLKKKSATSTRMDRTIGTGS 2393
                                 8889*****************999888******987779****642443223367899************************ PP

                        NAM   83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 
                                 W+   + k+v++k +++l g+kk   f k +    +   W++hey l
  Tp57577_TGAC_v2_mRNA14116 2394 WEGENSGKSVFAKnTNQLLGIKKRYRFEKSKMD--SDGGWILHEYIL 2438
                                 **********99956777*********854444..599*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.50.50.607.7E-4216111IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519057.96E-3020271IPR023753FAD/NAD(P)-binding domain
PRINTSPR004196.4E-82345No hitNo description
PfamPF134502.6E-152692No hitNo description
PRINTSPR004196.4E-84760No hitNo description
Gene3DG3DSA:3.50.50.607.7E-42185268IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF568015.23E-715371072No hitNo description
PfamPF005019.6E-59565962IPR000873AMP-dependent synthetase/ligase
Gene3DG3DSA:3.40.50.9803.5E-20565726No hitNo description
PROSITE patternPS004550721732IPR020845AMP-binding, conserved site
Gene3DG3DSA:3.40.50.9807.6E-37727890No hitNo description
Gene3DG3DSA:2.30.38.101.3E-7916964No hitNo description
SuperFamilySSF473363.4E-811161199IPR009081Phosphopantetheine binding ACP domain
Gene3DG3DSA:1.10.1200.101.5E-811161209IPR009081Phosphopantetheine binding ACP domain
PROSITE profilePS5007513.29511201189IPR009081Phosphopantetheine binding ACP domain
SMARTSM008230.009211211192IPR020806Polyketide synthase, phosphopantetheine-binding domain
PfamPF005505.7E-811241186IPR009081Phosphopantetheine binding ACP domain
PROSITE patternPS00012011471162IPR006162Phosphopantetheine attachment site
SuperFamilySSF473368.9E-1012101297IPR009081Phosphopantetheine binding ACP domain
Gene3DG3DSA:1.10.1200.101.7E-912101299IPR009081Phosphopantetheine binding ACP domain
PROSITE profilePS5007513.8212151284IPR009081Phosphopantetheine binding ACP domain
SMARTSM008230.008912161287IPR020806Polyketide synthase, phosphopantetheine-binding domain
PfamPF005502.3E-812181282IPR009081Phosphopantetheine binding ACP domain
PROSITE patternPS00012012421257IPR006162Phosphopantetheine attachment site
SuperFamilySSF511613.47E-913991527IPR011004Trimeric LpxA-like
Gene3DG3DSA:2.160.10.101.2E-814501529No hitNo description
Gene3DG3DSA:2.160.10.101.0E-1316661800No hitNo description
SuperFamilySSF511619.01E-1316991788IPR011004Trimeric LpxA-like
SuperFamilySSF511615.13E-1218882040IPR011004Trimeric LpxA-like
Gene3DG3DSA:2.160.10.109.9E-1219502043No hitNo description
PROSITE profilePS5100523.23323062459IPR003441NAC domain
PfamPF023651.6E-1023112437IPR003441NAC domain
SuperFamilySSF1019415.62E-2023112457IPR003441NAC domain
Gene3DG3DSA:2.60.120.6502.5E-6528643093No hitNo description
SuperFamilySSF511977.14E-6628643093No hitNo description
PfamPF136219.1E-4728703094No hitNo description
PROSITE profilePS5118428.31329443101IPR003347JmjC domain
SMARTSM005584.4E-1129503098IPR003347JmjC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042752Biological Processregulation of circadian rhythm
GO:0055114Biological Processoxidation-reduction process
GO:0070544Biological Processhistone H3-K36 demethylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0031177Molecular Functionphosphopantetheine binding
GO:0046975Molecular Functionhistone methyltransferase activity (H3-K36 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 3102 aa     Download sequence    Send to blast
MNTERSIEDQ FSKLHPSLPE NTRIGIVGAG PSGLSAAYAL TRLGYKNVTV LEKHHTVGGM  60
CESVEIEGKV YDLGGQVLAA SSAPVIFHLA KETGSALEEM DSHKLAVVDP SSGEYQDIKV  120
ADDYVSVMSL TLQIQEKVKN CGRIGIHAVS EIASDLTPEY LQCHGLKSIP KSVAYGYTAS  180
GYGFVQDMPY AYLHEFTRTS MAGKIRRFKG GYTSLWQKIA ESLPLRLLCN TEVLAINRNS  240
DTVMVDVKRL NVVETLEFDK IIISGSFPLK YGKTYRSPST CIESEKGVMD ASDLEKDLFS  300
KVETNDYYTT VLKIKGLEHF PIGFYYFSKY MEDPSTIGNP VAMQKFYADS NIFLFWSYGN  360
SVDIKGPTVK DLAVKTVEAM GGEVESFILQ RCFKYFPHVS SQDMKDGFYE KLESELQGSR  420
NTYYVGGLMA FELTERNSSY AMALVCKNFA NSNELPTFPY TKVIYHLHIF LQMNDYRNLA  480
FMDLRLRKSY FRNRPATNRS MFMQNLFPLQ TESQKKNPKE LGELPEVQCP NLPTLNSYLK  540
YWGTHPITQN RTLYTWINEE GNPVCRRTYG EQHFNSSCIA HKLLTSQMPV IKPGDRVLLV  600
YVPGLDFIDA FFGCLRAKIL PVPIIPPDPM QRSGQALMKI ENIAKSCGIV AILSTIAYHS  660
AVRAGSLKNL ISLTRKNGKS SARWPNLPWL HTDTWVKNSK NIALEHLDDQ CEPQPDDTCF  720
LQFTSGSTGD AKGVMISHGG LIHNVKLMQR RYKSTSRTKL VSWLPQYHDM GLIGGLFTSL  780
VSGGTAILFS PMTFIKKPIL WLEIISKYQA THSAGPNFAF ELLIRRLEAD KDKIQNLDLS  840
SLVFLMVAAE PVRQKTLKRF IELTTPLGLS QKVMAPGYGL AENCVFVSCA FGEGQPIIVD  900
WQGRVCCGYV HPEDTDIDIR IVDPDTCEEL HVDGKEGEIW ISSPSAGVGY WGREELSQKT  960
FRNGLANRPX XXXXXXXXXX XXXXXEEILS AKGISIPEGS DQVALVVIAE VRDGKPVSKD  1020
VIENIKARVA EEHGVSLASV KLIKPRTISK TTSGKIKRFE CIKQFTDETL NLVPLGTKPM  1080
LTKKSLVWSF TTTRREEKPV RLQLVRCSSV PSKRINKSDI VEFLKVLISE QTGVPINNVS  1140
VTDNLTSYGI DSIGVVKATQ KLSDFLGTPV AAIDVFTASC ILELATFSED LLSKTRPQLV  1200
RSVPIPTKRV NKNDIVEFLK GLISEQTGVA INKISVTDNL TSYGIDSIGV VKATQKLSDF  1260
LGTPVAAIDV FTASCITELA NFSEDLLSKT QPQLSSNPTD VPEADIDCTE SAAEVSKSRQ  1320
WGSRLLQFLA LIYISIMLAW PAYLSITAFL NSSMCVSKSV AGVPWLNYII SLIFAPLAWI  1380
ICIASTCVCI SLFGSSLLGP NCELASDISI YSMDFVKWWA LYKAQEISSK VLATHLRGTV  1440
FLKHWFEMFG ARIGSSVLID TVDITDPALV SIGDEVVIAE GVLVQSHEVK NGILSLHPIK  1500
IGKCSSIGPY AVVQKGSVVG ESVEVQALQK VGGGEHVLKP DKVNNIDKNA DLPIINSKTQ  1560
YDAIYHFIGI YFVGFLSSLA AAIAYFLYIK FSKQPPSLQQ FSFVCICGAF HWIPFTVIAY  1620
ATMFSDVPSN PITFAMTFTS AYLLHGLILI TLTAVFSRLL ICNQNKTESI TWFRRQMNIS  1680
CHLRCAKLLS GTEAFCIYLR LLGAKIGKHC SIRAINPVSN PELMSIGAGV HLGDFSKIIT  1740
GFHSSNGYAS GKIEVQDNSV IGSQSLILPG SLIQKNVILG ALSLAPMNSI LQEGGLYIGS  1800
QSHVSNLTAP LHKQDSQKVT LTLTRTWYQT FTSLFIQPFL QTALPHILLA LSIYPPLNLI  1860
FHLKNTKKVP IFWLLPMFWI LSGILAALTC VIAKWVLIGR KKKGEKIPIW SKSIIFDSTW  1920
QAIRTLIGDY FMEMTCGSFM FVLWMKMMGV DVNIGDDDVY VDSMGTLLNP EMVKIEKGGC  1980
VGKEALLFGH IYEGDEGGMV KFGEIKIGEN GFVGSRAVVM PGVVLENEAN VGALSLVMKE  2040
EIVRSSNPSK VNKLSLESNN KQLHQVKLAR QDAARVLFPQ LDSLTRETTP NLSTKQRHSE  2100
ISETHFTISF TQCLSVSPIT PKNFLKTFFQ KSFLISSQKQ GKNKKQLIEK QKRNKLYDSQ  2160
QLKQSSVFFV VVVVGLKTMK MKKVNTFFLI FMILTFVVSL PFVHCSSSTR IYRTNVEGGS  2220
RNLAKTSIEV EIARFKNEGV FVGSVEDSAR EVPTGPXXXX XXXXXXXXXX XXXXXXXXXX  2280
XXXXXXGSIL LYHSCSIPYI IMTHHHNSNK DFKVTDDELL QSFLYNKIHN KPLPDYMTIL  2340
EYDLFGTVKN PCEIWEEFAA FHSYSGKDLY FFSTLKKKSA TSTRMDRTIG TGSWEGENSG  2400
KSVFAKNTNQ LLGIKKRYRF EKSKMDSDGG WILHEYILDQ SLISNPSASN YVLCRFRKNL  2460
XXSNKNSRTK NVGQNKQRKT VVTPCAATTT TITGSNTLLS KTTIYEPINE SNGEHYKTNV  2520
VNEESRYKEG MNSLKCNLNI WPKETSIVLA LEAMTKSENN SEINKEHVEC IMNKEDDGDI  2580
IIDTEEDDSK EEEGDGTISW PKYFSQELIN KNEGCLKGEE NVPMISNNFN KELLFESLLN  2640
NKNISLVCFK YLTLFHYTHS LTFHFFNRLT GAPTRRHTKC QXXXXSKTTA SGVDSPCNDL  2700
KTPTLDTESP TLLHSISEQG GYAYVRMASL AAAGDIRAAE AVREMAWEQL HSGPWHSVLP  2760
VWRDAYSMAC LHVAKHHYEN GEFKEALKAL DMGIIMGGNL LRKDLDSAIG KVSEKARSIR  2820
VSDGSYQDFG NSEHQLVDHD FDVSKVLQLL PVKSLASKLV VKRSGLSLEK FLKDHYLSGT  2880
PVIISDCMAH WPAKKNWNNI DYLLRVAGDR TVPVEVGKNY LCADWKQELV TFSEFLERIR  2940
SHSCSPGGPT YLAQHPLFDQ INELRRDIFI PDYCFAGGGE LRSLNAWFGP AGTVTPLHHD  3000
PHHNILAQVV GKKYIRLYPA SVSEELFPYS ETMLSNSSQV DLDDVDERKF PKVQDLEFVD  3060
CILEEGEMLY IPPKWWHYVR SLTTSLSVSF WWSEGESSSP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4aap_A4e-69285430931239LYSINE-SPECIFIC DEMETHYLASE 8
4aap_B4e-69285430931239LYSINE-SPECIFIC DEMETHYLASE 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636806.10.0uncharacterized protein LOC25492618
RefseqXP_024636807.10.0uncharacterized protein LOC25492618
TrEMBLA0A396IA510.0A0A396IA51_MEDTR; Putative AMP-dependent synthetase/ligase, amine oxidase, L-2-aminoadipate reductase
STRINGXP_004507120.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-13NAC-domain protein 101