PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1413
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 249aa    MW: 29259.9 Da    PI: 8.878
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1413genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.1e-11137222177
                               EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                               f+k+l++sd     +rl + k+++e++        +++ e ++ ++ +d +gr+++++++++ k+  ++ ++GWk+F k++ L++
  Tp57577_TGAC_v2_mRNA1413 137 FEKKLSNSDLRVDyNRLFMTKSHVEDYflpflrecEENIEDGIHVVAYDMQGRTFNMTFKIWTKKFYVLTGSGWKNFFKQHSLRA 221
                               8999999997665699*****************997777899*****************999998666666************97 PP

                               T CS
                        B3  77 g 77 
                               +
  Tp57577_TGAC_v2_mRNA1413 222 N 222
                               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-13137241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-14137235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-10137247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNRSSKMKGK VYDFYPMDFN RDEHEVADIL LHMPMLHIVI EKRKNVKITL GGKRISKIRE  60
EIDNNNNVHA MLQNNIPDVV MENNVVHAMP QINIPDVRAM PQINILDVVM ENVNNTLDIP  120
MIPGVPNNNI FQCCKPFEKK LSNSDLRVDY NRLFMTKSHV EDYFLPFLRE CEENIEDGIH  180
VVAYDMQGRT FNMTFKIWTK KFYVLTGSGW KNFFKQHSLR ANQDHVKVWM FRHSQTNKIC  240
FALSIRRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1413
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598455.17e-54putative B3 domain-containing protein At4g03170
TrEMBLA0A2K3LR190.0A0A2K3LR19_TRIPR; Ap2 b3-like transcriptional factor family protein
STRINGAES686986e-53(Medicago truncatula)
STRINGAES687063e-53(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-21B3 family protein