PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14133

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 168aa MW: 18227.4 Da PI: 7.7703

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14133	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.9	2.7e-11	8	41	63	98
TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +GW++Fvk++ Lke+Df+vFk++g+s f v +f+ Tp57577_TGAC_v2_mRNA14133 8 NGWQQFVKDHSLKENDFLVFKYKGESHF--EVLIFD 41 6***********************9999..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.391	1	43	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-11	7	41	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.48E-12	7	41	No hit	No description
Pfam	PF02362	1.8E-8	8	41	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.5E-11	8	41	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MIPCTSCNGW QQFVKDHSLK ENDFLVFKYK GESHFEVLIF DGESLCEKTA SYFVGKCGHA 60 QTEQGGSKAK DTNTCAEEAI NTASNGKTCN AGVEFASPEK LTADALTKTT TIQFPFQPTG 120 KRAEKPVNEV TPVQTKKRGR PPKAGNSYER AHDLVACNKE HSGMAGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14133

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC157978	5e-68	AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence.
GenBank	AC202488	5e-68	AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
GenBank	BT053638	5e-68	BT053638.1 Medicago truncatula clone MTYFT1G-K-15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003589278.1	3e-65	B3 domain-containing protein REM16
Swissprot	Q8RYD1	1e-22	REM16_ARATH; B3 domain-containing protein REM16
TrEMBL	A0A2K3LLT7	8e-96	A0A2K3LLT7_TRIPR; B3 domain-containing protein (Fragment)
TrEMBL	A0A2K3MRE8	4e-94	A0A2K3MRE8_TRIPR; B3 domain-containing protein
STRING	AES59529	1e-64	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4446	26	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	6e-25	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14133

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]