PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1430
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 244aa    MW: 28172 Da    PI: 10.2074
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1430genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.2e-10134216176
                               EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                               f+k+l++sd   + +rl l k ++e++       +++ ee+++++++d +g+ +++k++++ ++  yvl +GWk F k++   +
  Tp57577_TGAC_v2_mRNA1430 134 FEKKLSTSDLRVNlNRLFLEKGHVEKYflpllkeSEDLEEGIDVVVYDMQGQMFNMKFKFWSGK-FYVLNGGWKIFFKSHSFLA 216
                               899**999987666****************999844556899****************999886.9*************98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-12134235IPR015300DNA-binding pseudobarrel domain
CDDcd100176.63E-10134242No hitNo description
Gene3DG3DSA:2.40.330.107.5E-14134230IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKETKSMHNL SFKSHNIMKR KRSNTPKIKR RVCGLHLMDF TSDEYEAADG LVLLQTLFQK  60
KNIVRRLKIT FGGKRICGKT YDNNVHSVVS KNKVCSSPQI IIPNVVMGNE CNPLNIPTIP  120
GVLSNNILGC CKPFEKKLST SDLRVNLNRL FLEKGHVEKY FLPLLKESED LEEGIDVVVY  180
DMQGQMFNMK FKFWSGKFYV LNGGWKIFFK SHSFLANQDH IKVWMFRHFE TDNLCFALSV  240
RRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3M0411e-133A0A2K3M041_TRIPR; Ap2 b3-like transcriptional factor family protein
STRINGXP_004498972.12e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-22B3 family protein