PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14355
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 913aa    MW: 101312 Da    PI: 8.1908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14355genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-19339439199
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                                f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v
  Tp57577_TGAC_v2_mRNA14355 339 FEKVLSASDAGRIGRLVLPKACAEAYfpHISHSEGLPLRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMELRAGDTV 421
                                99**************************555666777***************9989999999***9.***************** PP

                                EEEE-SSSEE..EEEEE-S CS
                         B3  81 vFkldgrsefelvvkvfrk 99 
                                +F++++  +++lv++++++
  Tp57577_TGAC_v2_mRNA14355 422 TFSRID-PGGKLVIGFRKS 439
                                ***987.899999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-30335446IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-24337438No hitNo description
SuperFamilySSF1019366.15E-21337441IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.152339440IPR003340B3 DNA binding domain
PfamPF023621.3E-16339439IPR003340B3 DNA binding domain
SMARTSM010191.8E-23339440IPR003340B3 DNA binding domain
PROSITE profilePS5105014.737603653IPR011124Zinc finger, CW-type
PfamPF074964.0E-12608650IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MGSDIGIVNG SCVHEWKRGW PLRSGGFAQL CFKCGFVEEW KCDIIDSLSA YENSVFCNKF  60
HRQQTGWREC NFCKKPIHCG CVVSRSLFEY LDFGGIGCVS CVKTSQHNMI RNTENPKWPV  120
SLTQNNARDM SSAHFDGRLF ASNVDEGKLM QLCRVVEASE SIHMNHAPRD NIITSNGKNN  180
QEVKPSFREG DTGFSNVIKP SIQSLTFSTL ENNRPTWEMK NIHESNAKPS LNMCLGNPSG  240
NNSFPLSAGE NIEGRLEGKV SPPFHQGPRS RPILPKLLKT GLTMNGETEK GSTSQPRIAR  300
PPGDGRGKNQ LLPRYWPRIT DQELERLSGD LKSTVVPLFE KVLSASDAGR IGRLVLPKAC  360
AEAYFPHISH SEGLPLRVQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QAMELRAGDT  420
VTFSRIDPGG KLVIGFRKSS NSTDMQDASP PSHSNGLSAK GATFSGGADN LPSRSNCGDF  480
LRSPKGNGEL LLNGHPESPH LGTGAAGLLK TENCEMTNNN SLDQKISALE KKRTRNIGLK  540
SKRLLIGNDD AMELRLTWEE AQDLLRPPPS VKPSIVTIED QVFEEYDEPP VFGKRTIFSA  600
SSSGMKEQWA QCDDCSKWRK LPVDALLPPK WTCSENVWDT SRSSCSAPEE LSSRELENLM  660
KTSKDFKKRR IVENSKLIQE HEPSGLDALA SLAVLGENLI DPTDSSAGAT TKHPRHRPGC  720
SCIVCIQPPS GKGRHKPTCT CNVCTTVKRR FKTLMLRKKK RQSEREADAA AKKDQIRKKD  780
DDLNTNGGAS RDDANPLEKE GGLNRSQTEV GESSAGKIDL NSDPNREDSQ LDNIAKLRRE  840
LSERMNMNQN VGLRTINTEV QEGQQHSSLV TQSNGEDKRH LSDDRSIASI ILNKERRDEV  900
YNQSNESQNN MS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-673174462131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1747758KRRFKTLMLRKK
2747760KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460465.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A2K3P3E50.0A0A2K3P3E5_TRIPR; B3 domain-containing protein
STRINGXP_004500368.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2