PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14379
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 131aa    MW: 15070.8 Da    PI: 10.2208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14379genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-094690655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                e+Er+RR+++ s++  Lr+l+P       + ++Ka+i e A+ Y k+Lq
  Tp57577_TGAC_v2_mRNA14379 46 LEIERKRREKLGSRLLVLRSLVPII-----TSMNKASIIEDAITYTKMLQ 90
                               589*********************6.....58***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.0274089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-124597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-74690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-94695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-114792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-84792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEQESDHRLS MSMEDLGFNT SYNMKGKLGE KHYDDVGPKV FISKNLEIER KRREKLGSRL  60
LVLRSLVPII TSMNKASIIE DAITYTKMLQ KEXXXXXXXX XXXXXXXXXX XQSKKHVNLL  120
LLGKRSIYLG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERKRRE
24954RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14379
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457137.13e-31transcription factor DYT1
TrEMBLA0A2K3N2Z04e-38A0A2K3N2Z0_TRIPR; Transcription factor DYSFUNCTIONAL TAPETUM 1
STRINGXP_004504967.12e-28(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-11bHLH family protein