PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14386
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 89aa    MW: 10644.2 Da    PI: 10.4513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14386genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000144972830
                               HHHHHHHHHHHHHHHHHCTSCC.C CS
                        HLH  8 rErrRRdriNsafeeLrellPk.a 30
                               +ErrRR++  s++  Lr+l+P+  
  Tp57577_TGAC_v2_mRNA14386 49 AERRRREKHISRLYILRSLIPNiT 72
                               7********************844 PP
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MEQENYNRLN VSLDELGFNS ENVSKTWKKR KEYYNEDGIR VFTAKNLGAE RRRREKHISR  60
LYILRSLIPN ITKASFLNFP HFLKYSFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636481.12e-18transcription factor DYT1
TrEMBLA0A072UQ304e-17A0A072UQ30_MEDTR; Helix loop helix DNA-binding domain protein
TrEMBLA0A396ICM91e-17A0A396ICM9_MEDTR; Putative transcription factor bHLH family
STRINGXP_004504967.13e-14(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-08bHLH family protein