PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14392
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 209aa    MW: 23773.5 Da    PI: 6.8128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14392genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-084790755
                               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               e Er+RR+++ s++  Lr+l+P       + ++Ka+i e A+ Y k+Lq
  Tp57577_TGAC_v2_mRNA14392 47 ETERKRREKLGSRLLVLRSLVPII-----TSMNKASIIEDAITYTKMLQ 90
                               78*********************6.....58***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.0214089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1345105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-94695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-84794No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1147108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-64790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEQENNHRLS VSVEDLGFNN GSNMKGKLSQ KHYDDAGPKL FISKNLETER KRREKLGSRL  60
LVLRSLVPII TSMNKASIIE DAITYTKMLQ KEVEILTKEL DEMEETRKKK AEQKTCESSA  120
GEKINISWIE EEIQVAKIDG NMLWAKMIIE NKRGRFQKLV EDLHTSNIEM IDLSVTTIEG  180
AYLITATLKG MGGEPIELYQ IPTIIKFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERKRRE
24954RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457137.12e-90transcription factor DYT1
TrEMBLA0A2K3N2Z01e-135A0A2K3N2Z0_TRIPR; Transcription factor DYSFUNCTIONAL TAPETUM 1
STRINGXP_004504967.15e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-27bHLH family protein