PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14412
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 224aa    MW: 25548.2 Da    PI: 7.5371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14412genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000236688123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C k F ++  L  H++ H
  Tp57577_TGAC_v2_mRNA14412 66 FECQYCFKEFANSQALGGHQNAH 88
                               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-56192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-66293No hitNo description
PROSITE profilePS5015711.4066693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MCDISVEKRL RLFGFELNPT KNNNEGLVKE SNEGDESVNS SNSISSGGEK IVQEKNSSRD  60
QDERKFECQY CFKEFANSQA LGGHQNAHKK ERMKKKRLQL QARKASINYY LQPFQKNHHG  120
FSFNSNDTHW FYDPSSYNSE FSLCEDSQIS FKSKNVHDTN SSWYSLPSNV PSSQQETCMF  180
TLSNIDDRPF IFNPSSNQIH GKALDLQLGL TLESNSMSSL KRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337630.0CT033763.2 Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE.
GenBankCT0337670.0CT033767.2 Medicago truncatula chromosome 5 clone mth2-175p8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639262.11e-119zinc finger protein 5
TrEMBLA0A396HRK81e-118A0A396HRK8_MEDTR; Putative transcription factor C2H2 family
STRINGAES963291e-118(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-16zinc finger protein 5