PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1446
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WOX
Protein Properties Length: 399aa    MW: 44706.6 Da    PI: 8.2893
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1446genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.4e-2298157357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Tp57577_TGAC_v2_mRNA1446  98 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 157
                               7*****************99**************************************97 PP
2Wus_type_Homeobox114.55.4e-3797159365
         Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                               ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Tp57577_TGAC_v2_mRNA1446  97 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 159
                               79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-595162IPR001356Homeobox domain
PfamPF000468.2E-2098157IPR001356Homeobox domain
SuperFamilySSF466891.18E-1298164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-998157IPR009057Homeodomain-like
CDDcd000862.04E-699159No hitNo description
PROSITE profilePS5007111.451103158IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MWMVGYNEGS DFNMSDYPFN GRKLRPLIPR PVTSPNNNTS TTTPSLNRIH GGANDFFSQY  60
HNLQAISVGG DQSKRSSELN NSQAAAAAAA GGGVVVSSRW NPTPEQLRAL EELYRRGTRT  120
PSAEQIQQIT AQLRRFGKIE GKNVFYWFQN HKARERQKRR RQMESAAADH QFDATLEKKD  180
LLGASRTVFE VEHTKNWLPS SNSSTSTLPL AEESVSIQRV AGKADEYTRT DGWVQFDEAA  240
ELQQRRNFME RNATWHMMQL TTCPTLINTT QLNSSNYTTT PTTTTTTTTT SSTTTASMAT  300
TATVTTRLMD PKLMIKTHHD LSLFISPQTQ NAFNIHLSNN THHHLQDDHS LESHHQTLQL  360
FPIRNGGLCS DDNNKETEIS ASAMNAPNQF IEFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2762551e-169JF276255.1 Medicago sativa STENOFOLIA-like 2 protein (STL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631107.11e-173WUSCHEL-related homeobox 1
TrEMBLA0A2K3MSF40.0A0A2K3MSF4_TRIPR; WUSCHEL-related homeobox 1-like protein
STRINGAET055831e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-52WUSCHEL related homeobox 1