PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14548

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 143aa MW: 15731.8 Da PI: 7.013

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14548	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.7	2.2e-44	9	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC++dC++apyfp e+p+kf nvhk+FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg i+ lq Tp57577_TGAC_v2_mRNA14548 9 PCAACKFLRRKCNQDCIFAPYFPPEEPQKFVNVHKIFGASNVSKFLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQ 92 7********************************************************************************* PP DUF260 85 qqleqlkaelallke 99 +ql +l++el+++++ Tp57577_TGAC_v2_mRNA14548 93 KQLIRLQKELDATNA 107 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.399	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-43	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MASSYSSSPC AACKFLRRKC NQDCIFAPYF PPEEPQKFVN VHKIFGASNV SKFLNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGAISV LQKQLIRLQK ELDATNADLI SITHQGSISL 120 GLGHVDHSNA FLNYPSNLSN DM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-59	6	110	8	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-59	6	110	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14548

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174342	1e-141	AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618148.3	5e-89	LOB domain-containing protein 25
Swissprot	Q8L8Q3	4e-64	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2K3LZC1	1e-101	A0A2K3LZC1_TRIPR; LOB domain-containing protein 25-like
STRING	AES74366	5e-89	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-63	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14548

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]