PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14556
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 259aa    MW: 29376.8 Da    PI: 9.8224
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14556genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.2e-1373115347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                ++ +eE  +l+ a + +G++ W+tI + ++ gRt +q+k+++++ 
  Tp57577_TGAC_v2_mRNA14556  73 KFNKEEKVKLLAAQRVYGNK-WATICKLFP-GRTNNQVKNHFYMM 115
                                7899****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.31E-1562123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-1562118IPR009057Homeodomain-like
PROSITE profilePS5129416.55466120IPR017930Myb domain
SMARTSM007174.3E-1170118IPR001005SANT/Myb domain
PfamPF002492.3E-1073115IPR001005SANT/Myb domain
CDDcd001671.41E-973116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFLWKQRILR TLIILLEVVG QDLKMISLIS LLNTLVLIIG TTLLSIFMED HGKVAEQDGL  60
MINQLDPKIN GSKFNKEEKV KLLAAQRVYG NKWATICKLF PGRTNNQVKN HFYMMMAKMQ  120
REQSSSFSRM GNSIFRTPPT MYRITNTTDV PNSACTNVNH FTRPLLYRQA YGSQMGLHGE  180
RKVEVGNFGY ETNFGSYVGH MGKINNADKS NYSYSNSEAS VSESSTTIMT NVSIFGECEN  240
VWGKTKLQYF DFLGIRDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451507.19e-53transcription factor MYB54
TrEMBLA0A072UI902e-51A0A072UI90_MEDTR; Myb transcription factor
STRINGXP_004489664.11e-46(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-23myb domain protein 105