PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14564
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 141aa    MW: 15615.5 Da    PI: 6.4955
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14564genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.94.2e-449107199
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++red+++sl+yeAear++dPvyG+vg+i+ lq
  Tp57577_TGAC_v2_mRNA14564   9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKLLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQ 92 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallke 99 
                                +ql  l++el+++++
  Tp57577_TGAC_v2_mRNA14564  93 RQLLGLQKELDATNA 107
                                **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.4948109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-439106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MTSSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKVFGASNV SKLLNEVLPH  60
QREDTVNSLA YEAEARIKDP VYGCVGFISG LQRQLLGLQK ELDATNADLI QFTIQGSSSL  120
GLGHVDYSNG FYNYPSNFEQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-5821134115LOB family transfactor Ramosa2.1
5ly0_B7e-5821134115LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14564
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743421e-134AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618147.12e-85LOB domain-containing protein 25
RefseqXP_024641260.12e-85LOB domain-containing protein 25
RefseqXP_024641261.12e-85LOB domain-containing protein 25
RefseqXP_024641262.12e-85LOB domain-containing protein 25
SwissprotQ8L8Q32e-63LBD25_ARATH; LOB domain-containing protein 25
SwissprotQ9FML43e-63LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2K3KYH01e-100A0A2K3KYH0_TRIPR; LOB domain-containing protein 25-like
STRINGAES743657e-85(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.18e-66LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]