PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1468
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 154aa    MW: 17333.3 Da    PI: 8.5896
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1468genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.9e-1342135183
                               EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                               f+k+l+ sd     +rl l k +++++       g++ ee+++ +++d +g+++++k++++ ++  yvl +GWk Fv+++ L ++
  Tp57577_TGAC_v2_mRNA1468  42 FEKKLSASDLKVDlNRLFLDKGHVKKYslpllkeGEDLEEGIDAIVYDMQGKTFNMKFKFWSGK-FYVLNGGWKTFVQSHSLLAN 125
                               89999999976555******************997777799*****************999886.9****************998 PP

                               -E....EEEE CS
                        B3  78 Df....vvFk 83 
                                     ++F+
  Tp57577_TGAC_v2_mRNA1468 126 QYhvtlCMFR 135
                               7522224455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1542143IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1542141IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001642137IPR003340B3 DNA binding domain
CDDcd100179.97E-1342140No hitNo description
PfamPF023623.2E-942129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVCSSPQIII PNVVMGNECN PLNIPTIPGV LSNNILGCCK PFEKKLSASD LKVDLNRLFL  60
DKGHVKKYSL PLLKEGEDLE EGIDAIVYDM QGKTFNMKFK FWSGKFYVLN GGWKTFVQSH  120
SLLANQYHVT LCMFRHSETG NLCFARLPYL LTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1468
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598453.24e-49putative B3 domain-containing protein At4g03170
TrEMBLA0A2Z6M7474e-87A0A2Z6M747_TRISU; Uncharacterized protein
STRINGXP_004498972.12e-48(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-21B3 family protein