PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA14723

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 188aa MW: 21561 Da PI: 10.0767

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA14723	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.7	6.5e-21	20	122	36	128
NAM 36 evdiykvePwdLpkkvkaeekew...yfFskrdkkyatgkrknra.......tksgyWkatgkdkevlskkgelvglkktLvfy 109 e +i++++P++Lp+++++ +++w f s++ ++ ++ ++k+++ ++ +W++tgk+++v++ +++l+g kk+Lv+y Tp57577_TGAC_v2_mRNA14723 20 ENGICYTHPEKLPATFSS-KQRWsdpPFLSPTIQSIHNRNKKKKKvhsdhddGSETRWHKTGKTRQVYN-NSKLKGYKKILVLY 101 447********76655.45564557999999988887777775344444433788********.999******* PP NAM 110 ..kgrapkgektdWvmheyrl 128 g+++k+ekt+Wvmh+y+l Tp57577_TGAC_v2_mRNA14723 102 tnYGKQRKPEKTNWVMHQYHL 122 6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.335	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-21	9	141	IPR003441	NAC domain
Pfam	PF02365	1.5E-7	58	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MXXHKLHPLI DEFIPTLEGE NGICYTHPEK LPATFSSKQR WSDPPFLSPT IQSIHNRNKK 60 KKKVHSDHDD GSETRWHKTG KTRQVYNNSK LKGYKKILVL YTNYGKQRKP EKTNWVMHQY 120 HLGNDEEEKE GVLVVSKVFY QTQPRQCGGG NSLMKDSKTM KGQNGNEVMN GKTSTTMDHL 180 LSTIIQI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA14723

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456684.1	2e-90	NAC domain-containing protein 73
Swissprot	O49459	4e-64	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A072UXW5	4e-89	A0A072UXW5_MEDTR; NAC transcription factor-like protein
STRING	XP_004505536.1	2e-81	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-63	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA14723

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]