PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14785
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 160aa    MW: 18576.2 Da    PI: 8.402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14785genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53.1e-1066153795
                                .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                                + +  ++++l+l k+fa e+     +e  +++l  ++g s   k+   k++ r    + +++ W++Fv+ +g  +gD++ F+++
  Tp57577_TGAC_v2_mRNA14785  66 TDYEATKSQLTLNKEFA-EYvR-T-TEYDQVILCGPNGTSIATKI--IKYKVRwyytVKFGSQWRKFVSTKGFVSGDVLNFMFI 144
                                567788899********.6624.3.34448***************..444444344455779********************99 PP

                                SSSEE..EEE CS
                         B3  86 grsefelvvk 95 
                                ++ e++ v++
  Tp57577_TGAC_v2_mRNA14785 145 DK-EKNNVMR 153
                                85.3333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.329139IPR003340B3 DNA binding domain
PROSITE profilePS508639.13660159IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-1063152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1063152IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MITEGWEEMR KVFRIEGNQL VTTTYAGFKR FIVDVHPGEL NPNELSSLHS FKFEDNEPLS  60
FSVRPTDYEA TKSQLTLNKE FAEYVRTTEY DQVILCGPNG TSIATKIIKY KVRWYYTVKF  120
GSQWRKFVST KGFVSGDVLN FMFIDKEKNN VMRVVKLED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14785
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LCF21e-103A0A2K3LCF2_TRIPR; ATP-dependent DNA helicase PIF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1490222