PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14797
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 304aa    MW: 34229.2 Da    PI: 7.8352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14797genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.5e-201461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEd+ lvd+++++G g+W+t +++ g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA14797 14 RGAWTPEEDQALVDYINKHGHGNWRTLPNHAGLLRCGKSCRLRWINYL 61
                               89******************************99************97 PP
2Myb_DNA-binding543.8e-1767112148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++T eE+  +++++++lG++ W++Ia+ ++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA14797  67 RGPFTNEEETTIIQLHALLGNR-WAAIASQLQ-GRTDNEIKNYWNTHL 112
                                89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.028961IPR017930Myb domain
SuperFamilySSF466892.32E-3111108IPR009057Homeodomain-like
SMARTSM007179.5E-151363IPR001005SANT/Myb domain
PfamPF002492.5E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241568IPR009057Homeodomain-like
CDDcd001677.13E-121661No hitNo description
PROSITE profilePS5129425.86562116IPR017930Myb domain
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2769116IPR009057Homeodomain-like
CDDcd001672.20E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGKAPCCEKH GVRRGAWTPE EDQALVDYIN KHGHGNWRTL PNHAGLLRCG KSCRLRWINY  60
LRPGIKRGPF TNEEETTIIQ LHALLGNRWA AIASQLQGRT DNEIKNYWNT HLKKRVLQSP  120
GEKNLCLIPD KNVQSNSPST RHMVQWESAR VEAETRLSME STLLNSDSTT KTSPDYFLQL  180
WHSEVGEAFR KIKGKEEASS SSLSSSKLEE SCSNVSLQVK RTGTQSLKVS TPKHEDVNTT  240
QEQKTSSYRP KLEDDRAGSD SGNYEFLDTS DSALKHLLRM PDDDIGFLGQ NDNFLNLLDG  300
RCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14797
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-32AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469680.10.0transcription factor MYB41
SwissprotQ9M2D92e-91MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2K3MSA20.0A0A2K3MSA2_TRIPR; Protein ODORANT1-like
STRINGXP_004496577.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-90myb domain protein 17