PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14802
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 265aa    MW: 30383.1 Da    PI: 9.2996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14802genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-151562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g W++eEd  l +++ ++G g+W++++ + g+ R +k+c++rw +yl
  Tp57577_TGAC_v2_mRNA14802 15 KGLWSPEEDHNLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                               678*******************************************97 PP
2Myb_DNA-binding55.71.1e-1768113148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++++E+e ++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
  Tp57577_TGAC_v2_mRNA14802  68 RGKFSKQEEETILTLHHILGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                                89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-22965IPR009057Homeodomain-like
PROSITE profilePS5129417.7921062IPR017930Myb domain
SuperFamilySSF466891.32E-2812109IPR009057Homeodomain-like
SMARTSM007172.3E-91464IPR001005SANT/Myb domain
PfamPF002491.6E-131562IPR001005SANT/Myb domain
CDDcd001675.82E-81862No hitNo description
PROSITE profilePS5129426.68463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2666117IPR009057Homeodomain-like
SMARTSM007171.0E-1667115IPR001005SANT/Myb domain
PfamPF002491.4E-1668113IPR001005SANT/Myb domain
CDDcd001671.95E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGFQQLEKTK PKHRKGLWSP EEDHNLRNYI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGK FSKQEEETIL TLHHILGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKA  120
MEMESHKQIH HHASSSSDTL NSSLSLQNHA TQDPQNYNIT KEIHQSSLPK LLFAEWLSLD  180
QVNGRNSTNS LDSLVMKNGF DQNSAFQEGA MQEGPFNGEY HHSNVMFNSH VKFPNQMVEN  240
GFVHCIPEVD LSNNFNLSND AMYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23111173108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14802
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496837.11e-159transcription factor LAF1-like
SwissprotQ9M0K45e-61LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1S2Y1341e-158A0A1S2Y134_CICAR; transcription factor LAF1-like
STRINGXP_004496837.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.15e-62myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]