PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14807
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 310aa    MW: 34709.4 Da    PI: 8.392
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14807genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind561.1e-17361273101
                                HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--H.HHHHHH.HHHTTEEE---SSBTTTTXTTSEEEEES CS
               HSF_DNA-bind   3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnf.aSFvRQ.LnmYgFkkvkdeekkskskekiweFkhk 84 
                                l+k+y++++d++++++isw+++g+sf+v++++ fa+++ p++   + f aSF    L  +gFkkv  ++         weF+++
  Tp57577_TGAC_v2_mRNA14807  36 LTKTYHLVDDRAINDVISWNDTGTSFIVWNPTVFARDCFPNISNITIFpASFANStLIYWGFKKVVPDR---------WEFSNE 110
                                78****************************************999988689*87626667******999.........****** PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  85 sFkkgkkellekikrkk 101
                                 F++g+k+ll++i+r+k
  Tp57577_TGAC_v2_mRNA14807 111 CFRRGQKRLLSDIQRRK 127
                                ***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-2531126IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-1736126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-1836126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-2036126IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
LVAIDSSPWL GRRNTTPIPP LPRXXXXXXX XXXXXLTKTY HLVDDRAIND VISWNDTGTS  60
FIVWNPTVFA RDCFPNISNI TIFPASFANS TLIYWGFKKV VPDRWEFSNE CFRRGQKRLL  120
SDIQRRKIVS ASPAVASNAT TAVPTAKTIV SPSISGDEQV ISSNSSPSIA PAEILDENQR  180
LRKENMQLTK EIEDIKSLYN NIFNLLSNYV KSQGKECCST LHLLPDNRCD GEDAATMAVE  240
EINPKLFGVT LGTKRGREEG RCIEDNTVLS LHQPVHADMK AGPLDSINSG KRKKLWLNRC  300
YRENQSVCN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6920234e-64EF692023.1 Trifolium repens clone CloverSSR-61_E07_028_1 microsatellite sequence.
GenBankEF6922504e-64EF692250.1 Trifolium repens clone CloverSSR-64_B12_047_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469699.11e-111heat stress transcription factor B-2b
TrEMBLA0A2K3NVZ50.0A0A2K3NVZ5_TRIPR; Heat stress transcription factor b-2b-like protein
STRINGXP_004496590.11e-107(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-55heat shock transcription factor B2A