PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1485
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 713aa    MW: 83101.7 Da    PI: 6.5698
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1485genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.31.7e-2550140191
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                               +fYneY++++GF +r+++ +ks+++g  t+r+f+C keg+r+ +k++ +  ++ raetrtgC+a++++++++  gk++v +++ +
  Tp57577_TGAC_v2_mRNA1485  50 DFYNEYSRRIGFGIRREYGNKSRKDGILTSRRFTCFKEGNRSVDKRD-RLIKEGRAETRTGCQARMVISLDRkVGKYKVVDFVAQ 133
                               6******************************************9999.9999******************9989*********** PP

                      FAR1  85 HnHelap 91 
                               HnH+l+p
  Tp57577_TGAC_v2_mRNA1485 134 HNHDLQP 140
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2150140IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.24765139IPR003657WRKY domain
PfamPF105512.7E-27272366IPR018289MULE transposase domain
PROSITE profilePS509668.815538585IPR007527Zinc finger, SWIM-type
SMARTSM005750.0044560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MNVSTFPVVE GVEKLVNNIH ENIVQHGQEG VVDYTPHLEM EFESEVAAYD FYNEYSRRIG  60
FGIRREYGNK SRKDGILTSR RFTCFKEGNR SVDKRDRLIK EGRAETRTGC QARMVISLDR  120
KVGKYKVVDF VAQHNHDLQP PGYVHMIRSH RRLHASQVVV ADESGLKQDF QEYVSEHDEF  180
GLKQDFQEYV SKHDDGIDII GYSGQEIMNY LPTKRMRSLM YGEVGALLMH FKRQSENPSF  240
FYDFQMDVEE KITNIFWADA QMINDYEYFG DVITFDTTYK SNKDYRPLGV FVGLNNHKQM  300
VVFGATLLYD ETIPSFQWLF ETFLKAMGGE KPKTILTDQD AAMAEAISLV MPETFHGLCT  360
WQIRENALKH VNHLCLKSSQ FYSDFEACID VHEEEGEFLK AWNVLLVEHN FSEDSWLHMI  420
FQLKEKWAWA YVKKQFTAGM RSIQLCESFN VEMKNHLKSD LNLVQFFTHF ERVVNGIRNN  480
ESEADYESRH ELPKLKMRRV RMLVQAGNIY TPKILEEFQE EYEEYQGTCI KNLKEGLYVV  540
TNYDNSKERM VIGNLVDQKV ACECCKFETH GILCNHALKV LDVMNIKLIP HHYIMKRWTR  600
DARLGSNRDW KRQHVELDIK ANFMMRCSEL CPRMVKLINK ASKSHETYAF LSKVYEETDK  660
IIDDMLAKKF VGGESLELCH ASVSIGNEKN DNNMDTVDVG GEKGIKKLRL FK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221630.0AC122163.20 Medicago truncatula clone mth2-16l2, complete sequence.
GenBankAC1260060.0AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633609.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2K3L6U30.0A0A2K3L6U3_TRIPR; Protein FAR1-related sequence 5-like
STRINGAES687200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-110FAR1-related sequence 5