PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1494
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 393aa    MW: 43764.9 Da    PI: 7.5353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1494genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.21.4e-181202423128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWk 84 
                               pGfrFhPt         k+k+++k  +++++++ +diyk+ePwdLp  +k+k+++ ewyf s  dkky + ++r+nrat+    +
  Tp57577_TGAC_v2_mRNA1494 120 PGFRFHPTXX------XKRKLTRKLPPCFDHLSVIDIYKFEPWDLPslSKLKTRDLEWYFISGLDKKYGSsSNRTNRATD---RE 195
                               8******975......5899999999999*****************5448888888************864779999888...46 PP

                       NAM  85 atgk..dkevlskkgelvglkk..tLvfykgrapkgektdWvmheyrl 128
                                tg+   + vls ++e  + +   tL+  ++ ap+ge+++Wvmheyr+
  Tp57577_TGAC_v2_mRNA1494 196 VTGRllARIVLS-RTERPWARAlpTLAQNRAWAPHGERSNWVMHEYRI 242
                               777753455555.56665555412666667889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-24115264IPR003441NAC domain
PROSITE profilePS5100523.756116264IPR003441NAC domain
PfamPF023653.0E-4120242IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVVKSVNGVC FDDSEEDRAD CVDDGFDITE LPFIVANTTR NAGTNKVNAT AVTKPKKLAT  60
ASVIGRPTAS VTAGLATASI PKDKKPLLKH LGLQRRTSGS LKNCNVKNLK GKIRLSNQGP  120
GFRFHPTXXX KRKLTRKLPP CFDHLSVIDI YKFEPWDLPS LSKLKTRDLE WYFISGLDKK  180
YGSSSNRTNR ATDREVTGRL LARIVLSRTE RPWARALPTL AQNRAWAPHG ERSNWVMHEY  240
RIIDQSLAKH GLHDAYVLCR VFQKSGSGPK NGEKYGAPFV ETEWVENVVE ENGEEKYGAP  300
FVEEAEWEKN VVQGQILPLP PVNKEVLKQD LSASDINEWV DSLVAVDDDY VEMFDLDTSV  360
TIGSVVEGRI LPLPPVNNEV LKQDLSASDI NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-1712027022174NAC domain-containing protein 19
3swm_B7e-1712027022174NAC domain-containing protein 19
3swm_C7e-1712027022174NAC domain-containing protein 19
3swm_D7e-1712027022174NAC domain-containing protein 19
3swp_A7e-1712027022174NAC domain-containing protein 19
3swp_B7e-1712027022174NAC domain-containing protein 19
3swp_C7e-1712027022174NAC domain-containing protein 19
3swp_D7e-1712027022174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443146.11e-74NAC domain-containing protein 53
TrEMBLA0A2K3JNW41e-118A0A2K3JNW4_TRIPR; NAC domain-containing protein (Fragment)
STRINGXP_004496133.17e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.16e-53NAC domain containing protein 53